diff --git a/src/lerobot/datasets/dataset_tools.py b/src/lerobot/datasets/dataset_tools.py
index b62d7d959..c900d7479 100644
--- a/src/lerobot/datasets/dataset_tools.py
+++ b/src/lerobot/datasets/dataset_tools.py
@@ -89,8 +89,8 @@ def delete_episodes(
     Args:
         dataset: The source LeRobotDataset.
         episode_indices: List of episode indices to delete.
-        output_dir: Directory to save the new dataset. If None, uses default location.
-        repo_id: Repository ID for the new dataset. If None, appends "_modified" to original.
+        output_dir: Root directory where the edited dataset will be stored. If not specified, defaults to $HF_LEROBOT_HOME/repo_id. Equivalent to new_root in EditDatasetConfig.
+        repo_id: Edited dataset identifier. Equivalent to new_repo_id in EditDatasetConfig.
     """
     if not episode_indices:
         raise ValueError("No episodes to delete")
@@ -152,7 +152,7 @@ def split_dataset(
         dataset: The source LeRobotDataset to split.
         splits: Either a dict mapping split names to episode indices, or a dict mapping
                 split names to fractions (must sum to <= 1.0).
-        output_dir: Base directory for output datasets. If None, uses default location.
+        output_dir: Root directory where the split datasets will be stored. If not specified, defaults to $HF_LEROBOT_HOME/repo_id.
 
     Examples:
       Split by specific episodes
@@ -243,8 +243,8 @@ def merge_datasets(
 
     Args:
         datasets: List of LeRobotDatasets to merge.
-        output_repo_id: Repository ID for the merged dataset.
-        output_dir: Directory to save the merged dataset. If None, uses default location.
+        output_repo_id: Merged dataset identifier.
+        output_dir: Root directory where the merged dataset will be stored. If not specified, defaults to $HF_LEROBOT_HOME/output_repo_id.
     """
     if not datasets:
         raise ValueError("No datasets to merge")
@@ -288,8 +288,8 @@ def modify_features(
         dataset: The source LeRobotDataset.
         add_features: Optional dict mapping feature names to (feature_values, feature_info) tuples.
         remove_features: Optional feature name(s) to remove. Can be a single string or list.
-        output_dir: Directory to save the new dataset. If None, uses default location.
-        repo_id: Repository ID for the new dataset. If None, appends "_modified" to original.
+        output_dir: Root directory where the edited dataset will be stored. If not specified, defaults to $HF_LEROBOT_HOME/repo_id. Equivalent to new_root in EditDatasetConfig.
+        repo_id: Edited dataset identifier. Equivalent to new_repo_id in EditDatasetConfig.
 
     Returns:
         New dataset with features modified.
@@ -390,8 +390,8 @@ def add_features(
     Args:
         dataset: The source LeRobotDataset.
         features: Dictionary mapping feature names to (feature_values, feature_info) tuples.
-        output_dir: Directory to save the new dataset. If None, uses default location.
-        repo_id: Repository ID for the new dataset. If None, appends "_modified" to original.
+        output_dir: Root directory where the edited dataset will be stored. If not specified, defaults to $HF_LEROBOT_HOME/repo_id. Equivalent to new_root in EditDatasetConfig.
+        repo_id: Edited dataset identifier. Equivalent to new_repo_id in EditDatasetConfig.
 
     Returns:
         New dataset with all features added.
@@ -427,8 +427,8 @@ def remove_feature(
     Args:
         dataset: The source LeRobotDataset.
         feature_names: Name(s) of features to remove. Can be a single string or list.
-        output_dir: Directory to save the new dataset. If None, uses default location.
-        repo_id: Repository ID for the new dataset. If None, appends "_modified" to original.
+        output_dir: Root directory where the edited dataset will be stored. If not specified, defaults to $HF_LEROBOT_HOME/repo_id. Equivalent to new_root in EditDatasetConfig.
+        repo_id: Edited dataset identifier. Equivalent to new_repo_id in EditDatasetConfig.
 
     Returns:
         New dataset with features removed.
@@ -1529,7 +1529,7 @@ def modify_tasks(
 
 def convert_image_to_video_dataset(
     dataset: LeRobotDataset,
-    output_dir: Path,
+    output_dir: Path | None = None,
     repo_id: str | None = None,
     vcodec: str = "libsvtav1",
     pix_fmt: str = "yuv420p",
@@ -1548,8 +1548,8 @@ def convert_image_to_video_dataset(
 
     Args:
         dataset: The source LeRobot dataset with images
-        output_dir: Directory to save the new video dataset
-        repo_id: Repository ID for the new dataset (default: original_id + "_video")
+        output_dir: Root directory where the edited dataset will be stored. If not specified, defaults to $HF_LEROBOT_HOME/repo_id. Equivalent to new_root in EditDatasetConfig.
+        repo_id: Edited dataset identifier. Equivalent to new_repo_id in EditDatasetConfig.
         vcodec: Video codec (default: libsvtav1)
         pix_fmt: Pixel format (default: yuv420p)
         g: Group of pictures size (default: 2)
@@ -1600,6 +1600,7 @@ def convert_image_to_video_dataset(
             # Video info will be updated after episodes are encoded
 
     # Create new metadata for video dataset
+    output_dir = Path(output_dir) if output_dir is not None else HF_LEROBOT_HOME / repo_id
     new_meta = LeRobotDatasetMetadata.create(
         repo_id=repo_id,
         fps=dataset.meta.fps,
diff --git a/src/lerobot/scripts/lerobot_edit_dataset.py b/src/lerobot/scripts/lerobot_edit_dataset.py
index afdc95efd..49825317d 100644
--- a/src/lerobot/scripts/lerobot_edit_dataset.py
+++ b/src/lerobot/scripts/lerobot_edit_dataset.py
@@ -21,6 +21,9 @@ This script allows you to delete episodes, split datasets, merge datasets,
 remove features, modify tasks, and convert image datasets to video format.
 When new_repo_id is specified, creates a new dataset.
 
+Path semantics (v2): --root and --new_root are exact dataset folders containing
+meta/, data/, videos/. When omitted, defaults to $HF_LEROBOT_HOME/{repo_id}.
+
 Usage Examples:
 
 Delete episodes 0, 2, and 5 from a dataset:
@@ -29,16 +32,31 @@ Delete episodes 0, 2, and 5 from a dataset:
         --operation.type delete_episodes \
         --operation.episode_indices "[0, 2, 5]"
 
-Delete episodes and save to a new dataset:
+Delete episodes from a local dataset at a specific path:
     lerobot-edit-dataset \
         --repo_id lerobot/pusht \
-        --new_repo_id lerobot/pusht_filtered \
+        --root /path/to/pusht \
         --operation.type delete_episodes \
         --operation.episode_indices "[0, 2, 5]"
 
-Split dataset by fractions:
+Delete episodes and save to a new dataset at a specific path and with a new repo_id:
     lerobot-edit-dataset \
         --repo_id lerobot/pusht \
+        --new_repo_id lerobot/pusht_filtered \
+        --new_root /path/to/pusht_filtered \
+        --operation.type delete_episodes \
+        --operation.episode_indices "[0, 2, 5]"
+
+Split dataset by fractions (pusht_train, pusht_val):
+    lerobot-edit-dataset \
+        --repo_id lerobot/pusht \
+        --operation.type split \
+        --operation.splits '{"train": 0.8, "val": 0.2}'
+
+Split dataset by fractions and save split datasets to a specific folder (base_folder/train, base_folder/val):
+    lerobot-edit-dataset \
+        --repo_id lerobot/pusht \
+        --new_root /path/to/base_folder \
         --operation.type split \
         --operation.splits '{"train": 0.8, "val": 0.2}'
 
@@ -56,15 +74,29 @@ Split into more than two splits:
 
 Merge multiple datasets:
     lerobot-edit-dataset \
-        --repo_id lerobot/pusht_merged \
+        --new_repo_id lerobot/pusht_merged \
         --operation.type merge \
         --operation.repo_ids "['lerobot/pusht_train', 'lerobot/pusht_val']"
 
+Merge multiple datasets to a specific output path:
+    lerobot-edit-dataset \
+        --new_repo_id lerobot/pusht_merged \
+        --new_root /path/to/pusht_merged \
+        --operation.type merge \
+        --operation.repo_ids "['lerobot/pusht_train', 'lerobot/pusht_val']"
+
+Merge multiple datasets from a list of local dataset paths:
+    lerobot-edit-dataset \
+        --new_repo_id lerobot/pusht_merged \
+        --operation.type merge \
+        --operation.repo_ids "['pusht_train', 'pusht_val']" \
+        --operation.roots "['/path/to/pusht_train', '/path/to/pusht_val']"
+
 Remove camera feature:
     lerobot-edit-dataset \
         --repo_id lerobot/pusht \
         --operation.type remove_feature \
-        --operation.feature_names "['observation.images.top']"
+        --operation.feature_names "['observation.image']"
 
 Modify tasks - set a single task for all episodes (WARNING: modifies in-place):
     lerobot-edit-dataset \
@@ -88,8 +120,8 @@ Modify tasks - set default task with overrides for specific episodes (WARNING: m
 Convert image dataset to video format and save locally:
     lerobot-edit-dataset \
         --repo_id lerobot/pusht_image \
-        --operation.type convert_image_to_video \
-        --operation.output_dir /path/to/output/pusht_video
+        --new_root /path/to/output/pusht_video \
+        --operation.type convert_image_to_video
 
 Convert image dataset to video format and save with new repo_id:
     lerobot-edit-dataset \
@@ -167,6 +199,7 @@ class SplitConfig(OperationConfig):
 @dataclass
 class MergeConfig(OperationConfig):
     repo_ids: list[str] | None = None
+    roots: list[str] | None = None
 
 
 @OperationConfig.register_subclass("remove_feature")
@@ -200,36 +233,46 @@ class ConvertImageToVideoConfig(OperationConfig):
 @OperationConfig.register_subclass("info")
 @dataclass
 class InfoConfig(OperationConfig):
-    type: str = "info"
     show_features: bool = False
 
 
 @dataclass
 class EditDatasetConfig:
-    repo_id: str
+    # Operation configuration.
     operation: OperationConfig
+    # Input dataset identifier. Always required unless for Merge operation.
+    repo_id: str | None = None
+    # Root directory where the input dataset is stored. If not specified, defaults to $HF_LEROBOT_HOME/repo_id.
     root: str | None = None
+    # Edited dataset identifier. When both new_repo_id (resp. new_root) and repo_id (resp. root) are identical, modifications are applied in-place and a backup of the original dataset is created. Required for Merge operation.
     new_repo_id: str | None = None
+    # Root directory where the edited dataset will be stored. If not specified, defaults to $HF_LEROBOT_HOME/new_repo_id. For Split operation, this is the base directory for the split datasets.
+    new_root: str | None = None
+    # Upload dataset to Hugging Face hub.
     push_to_hub: bool = False
 
 
-def get_output_path(repo_id: str, new_repo_id: str | None, root: Path | None) -> tuple[str, Path]:
-    if new_repo_id:
-        output_repo_id = new_repo_id
-        output_dir = root / new_repo_id if root else HF_LEROBOT_HOME / new_repo_id
-    else:
-        output_repo_id = repo_id
-        dataset_path = root / repo_id if root else HF_LEROBOT_HOME / repo_id
-        old_path = Path(str(dataset_path) + "_old")
+def get_output_path(
+    repo_id: str,
+    new_repo_id: str | None,
+    root: Path | str | None,
+    new_root: Path | str | None,
+) -> tuple[str, Path]:
+    input_path = Path(root) if root else HF_LEROBOT_HOME / repo_id
 
-        if dataset_path.exists():
-            if old_path.exists():
-                shutil.rmtree(old_path)
-            shutil.move(str(dataset_path), str(old_path))
+    output_repo_id = new_repo_id if new_repo_id else repo_id
+    output_path = Path(new_root) if new_root else HF_LEROBOT_HOME / output_repo_id
 
-        output_dir = dataset_path
+    # In case of in-place modification, create a backup of the original dataset (if it exists)
+    if output_path == input_path:
+        backup_path = input_path.with_name(input_path.name + "_old")
 
-    return output_repo_id, output_dir
+        if input_path.exists():
+            if backup_path.exists():
+                shutil.rmtree(backup_path)
+            shutil.move(input_path, backup_path)
+
+    return output_repo_id, output_path
 
 
 def handle_delete_episodes(cfg: EditDatasetConfig) -> None:
@@ -241,11 +284,15 @@ def handle_delete_episodes(cfg: EditDatasetConfig) -> None:
 
     dataset = LeRobotDataset(cfg.repo_id, root=cfg.root)
     output_repo_id, output_dir = get_output_path(
-        cfg.repo_id, cfg.new_repo_id, Path(cfg.root) if cfg.root else None
+        cfg.repo_id,
+        new_repo_id=cfg.new_repo_id,
+        root=cfg.root,
+        new_root=cfg.new_root,
     )
 
-    if cfg.new_repo_id is None:
-        dataset.root = Path(str(dataset.root) + "_old")
+    # In case of in-place modification, make the dataset point to the backup directory
+    if output_dir == dataset.root:
+        dataset.root = dataset.root.with_name(dataset.root.name + "_old")
 
     logging.info(f"Deleting episodes {cfg.operation.episode_indices} from {cfg.repo_id}")
     new_dataset = delete_episodes(
@@ -272,19 +319,27 @@ def handle_split(cfg: EditDatasetConfig) -> None:
             "splits dict must be specified with split names as keys and fractions/episode lists as values"
         )
 
+    if cfg.new_repo_id is not None:
+        logging.warning(
+            "split uses the original dataset identifier --repo_id to generate split names. The --new_repo_id parameter is ignored."
+        )
+
     dataset = LeRobotDataset(cfg.repo_id, root=cfg.root)
 
     logging.info(f"Splitting dataset {cfg.repo_id} with splits: {cfg.operation.splits}")
-    split_datasets = split_dataset(dataset, splits=cfg.operation.splits)
+    split_datasets = split_dataset(
+        dataset,
+        splits=cfg.operation.splits,
+        output_dir=cfg.new_root,
+    )
 
     for split_name, split_ds in split_datasets.items():
-        split_repo_id = f"{cfg.repo_id}_{split_name}"
         logging.info(
             f"{split_name}: {split_ds.meta.total_episodes} episodes, {split_ds.meta.total_frames} frames"
         )
 
         if cfg.push_to_hub:
-            logging.info(f"Pushing {split_name} split to hub as {split_repo_id}")
+            logging.info(f"Pushing {split_name} split to hub as {split_ds.repo_id}")
             LeRobotDataset(split_ds.repo_id, root=split_ds.root).push_to_hub()
 
 
@@ -295,18 +350,29 @@ def handle_merge(cfg: EditDatasetConfig) -> None:
     if not cfg.operation.repo_ids:
         raise ValueError("repo_ids must be specified for merge operation")
 
-    if not cfg.repo_id:
-        raise ValueError("repo_id must be specified as the output repository for merged dataset")
+    if cfg.repo_id is not None or cfg.root is not None:
+        logging.warning(
+            "merge uses --new_repo_id and --new_root for the merged dataset. The --repo_id and --root parameters are ignored."
+        )
 
-    logging.info(f"Loading {len(cfg.operation.repo_ids)} datasets to merge")
-    datasets = [LeRobotDataset(repo_id, root=cfg.root) for repo_id in cfg.operation.repo_ids]
+    if cfg.operation.roots:
+        if len(cfg.operation.roots) != len(cfg.operation.repo_ids):
+            raise ValueError("repo_ids and roots must have the same length for merge operation")
+        logging.info(f"Loading {len(cfg.operation.roots)} datasets to merge")
+        datasets = [
+            LeRobotDataset(repo_id=repo_id, root=root)
+            for repo_id, root in zip(cfg.operation.repo_ids, cfg.operation.roots, strict=True)
+        ]
+    else:
+        logging.info(f"Loading {len(cfg.operation.repo_ids)} datasets to merge")
+        datasets = [LeRobotDataset(repo_id) for repo_id in cfg.operation.repo_ids]
 
-    output_dir = Path(cfg.root) / cfg.repo_id if cfg.root else HF_LEROBOT_HOME / cfg.repo_id
+    output_dir = Path(cfg.new_root) if cfg.new_root else HF_LEROBOT_HOME / cfg.new_repo_id
 
-    logging.info(f"Merging datasets into {cfg.repo_id}")
+    logging.info(f"Merging datasets into {cfg.new_repo_id}")
     merged_dataset = merge_datasets(
         datasets,
-        output_repo_id=cfg.repo_id,
+        output_repo_id=cfg.new_repo_id,
         output_dir=output_dir,
     )
 
@@ -316,7 +382,7 @@ def handle_merge(cfg: EditDatasetConfig) -> None:
     )
 
     if cfg.push_to_hub:
-        logging.info(f"Pushing to hub as {cfg.repo_id}")
+        logging.info(f"Pushing to hub as {cfg.new_repo_id}")
         LeRobotDataset(merged_dataset.repo_id, root=output_dir).push_to_hub()
 
 
@@ -329,11 +395,15 @@ def handle_remove_feature(cfg: EditDatasetConfig) -> None:
 
     dataset = LeRobotDataset(cfg.repo_id, root=cfg.root)
     output_repo_id, output_dir = get_output_path(
-        cfg.repo_id, cfg.new_repo_id, Path(cfg.root) if cfg.root else None
+        cfg.repo_id,
+        new_repo_id=cfg.new_repo_id,
+        root=cfg.root,
+        new_root=cfg.new_root,
     )
 
-    if cfg.new_repo_id is None:
-        dataset.root = Path(str(dataset.root) + "_old")
+    # In case of in-place modification, make the dataset point to the backup directory
+    if output_dir == dataset.root:
+        dataset.root = dataset.root.with_name(dataset.root.name + "_old")
 
     logging.info(f"Removing features {cfg.operation.feature_names} from {cfg.repo_id}")
     new_dataset = remove_feature(
@@ -361,9 +431,10 @@ def handle_modify_tasks(cfg: EditDatasetConfig) -> None:
     if new_task is None and episode_tasks_raw is None:
         raise ValueError("Must specify at least one of new_task or episode_tasks for modify_tasks operation")
 
-    # Warn about in-place modification behavior
-    if cfg.new_repo_id is not None:
-        logging.warning("modify_tasks modifies datasets in-place. The --new_repo_id parameter is ignored.")
+    if cfg.new_repo_id is not None or cfg.new_root is not None:
+        logging.warning(
+            "modify_tasks modifies datasets in-place. The --new_repo_id and --new_root parameters are ignored."
+        )
 
     dataset = LeRobotDataset(cfg.repo_id, root=cfg.root)
     logging.warning(f"Modifying dataset in-place at {dataset.root}. Original data will be overwritten.")
@@ -399,32 +470,30 @@ def handle_convert_image_to_video(cfg: EditDatasetConfig) -> None:
     dataset = LeRobotDataset(cfg.repo_id, root=cfg.root)
 
     # Determine output directory and repo_id
-    # Priority: 1) new_repo_id, 2) operation.output_dir, 3) auto-generated name
+    # Priority: 1) new_root, 2) new_repo_id, 3) operation.output_dir, 4) auto-generated name
     output_dir_config = getattr(cfg.operation, "output_dir", None)
+    if output_dir_config:
+        logging.warning(
+            "--operation.output_dir is deprecated and will be removed in future versions. "
+            "Please use --new_root instead."
+        )
 
-    if cfg.new_repo_id:
-        # Use new_repo_id for both local storage and hub push
+    if cfg.new_root:
+        output_dir = Path(cfg.new_root)
+        output_repo_id = cfg.new_repo_id or f"{cfg.repo_id}_video"
+        logging.info(f"Saving to new_root: {output_dir} as {output_repo_id}")
+    elif cfg.new_repo_id:
         output_repo_id = cfg.new_repo_id
-        # Place new dataset as a sibling to the original dataset
-        # Get the parent of the actual dataset root (not cfg.root which might be the lerobot cache dir)
-        # Extract just the dataset name (after last slash) for the local directory
-        local_dir_name = cfg.new_repo_id.split("/")[-1]
-        output_dir = dataset.root.parent / local_dir_name
+        output_dir = HF_LEROBOT_HOME / cfg.new_repo_id
         logging.info(f"Saving to new dataset: {cfg.new_repo_id} at {output_dir}")
     elif output_dir_config:
-        # Use custom output directory for local-only storage
         output_dir = Path(output_dir_config)
-        # Extract repo name from output_dir for the dataset
         output_repo_id = output_dir.name
-        logging.info(f"Saving to local directory: {output_dir}")
+        logging.info(f"Saving to local directory: {output_dir} as {output_repo_id}")
     else:
-        # Auto-generate name: append "_video" to original repo_id
         output_repo_id = f"{cfg.repo_id}_video"
-        # Place new dataset as a sibling to the original dataset
-        # Extract just the dataset name (after last slash) for the local directory
-        local_dir_name = output_repo_id.split("/")[-1]
-        output_dir = dataset.root.parent / local_dir_name
-        logging.info(f"Saving to auto-generated location: {output_dir}")
+        output_dir = HF_LEROBOT_HOME / output_repo_id
+        logging.info(f"Saving to auto-generated location: {output_dir} as {output_repo_id}")
 
     logging.info(f"Converting dataset {cfg.repo_id} to video format")
 
@@ -499,8 +568,20 @@ def handle_info(cfg: EditDatasetConfig):
         sys.stdout.write(f"{feature_dump_str}\n")
 
 
+def _validate_config(cfg: EditDatasetConfig) -> None:
+    if isinstance(cfg.operation, MergeConfig):
+        if not cfg.new_repo_id:
+            raise ValueError("--new_repo_id is required for merge operation (the merged dataset identifier)")
+    else:
+        if not cfg.repo_id:
+            raise ValueError(
+                f"--repo_id is required for {cfg.operation.type} operation (the input dataset identifier)"
+            )
+
+
 @parser.wrap()
 def edit_dataset(cfg: EditDatasetConfig) -> None:
+    _validate_config(cfg)
     operation_type = cfg.operation.type
 
     if operation_type == "delete_episodes":
diff --git a/tests/scripts/test_edit_dataset_parsing.py b/tests/scripts/test_edit_dataset_parsing.py
index 8800b92ee..4d758ae35 100644
--- a/tests/scripts/test_edit_dataset_parsing.py
+++ b/tests/scripts/test_edit_dataset_parsing.py
@@ -27,6 +27,7 @@ from lerobot.scripts.lerobot_edit_dataset import (
     OperationConfig,
     RemoveFeatureConfig,
     SplitConfig,
+    _validate_config,
 )
 
 
@@ -51,11 +52,23 @@ class TestOperationTypeParsing:
         ],
     )
     def test_operation_type_resolves_correct_class(self, type_name, expected_cls):
-        cfg = parse_cfg(["--repo_id", "test/repo", "--operation.type", type_name])
+        cfg = parse_cfg(
+            ["--repo_id", "test/repo", "--new_repo_id", "test/merged", "--operation.type", type_name]
+        )
         assert isinstance(cfg.operation, expected_cls), (
             f"Expected {expected_cls.__name__}, got {type(cfg.operation).__name__}"
         )
 
+    def test_merge_requires_new_repo_id(self):
+        cfg = parse_cfg(["--operation.type", "merge"])
+        with pytest.raises(ValueError, match="--new_repo_id is required for merge"):
+            _validate_config(cfg)
+
+    def test_non_merge_requires_repo_id(self):
+        cfg = parse_cfg(["--operation.type", "delete_episodes"])
+        with pytest.raises(ValueError, match="--repo_id is required for delete_episodes"):
+            _validate_config(cfg)
+
     @pytest.mark.parametrize(
         "type_name, expected_cls",
         [
@@ -69,6 +82,8 @@ class TestOperationTypeParsing:
         ],
     )
     def test_get_choice_name_roundtrips(self, type_name, expected_cls):
-        cfg = parse_cfg(["--repo_id", "test/repo", "--operation.type", type_name])
+        cfg = parse_cfg(
+            ["--repo_id", "test/repo", "--new_repo_id", "test/merged", "--operation.type", type_name]
+        )
         resolved_name = OperationConfig.get_choice_name(type(cfg.operation))
         assert resolved_name == type_name