Dataset tools (#2100)

* feat(dataset-tools): add dataset utilities and example script

- Introduced dataset tools for LeRobotDataset, including functions for deleting episodes, splitting datasets, adding/removing features, and merging datasets.
- Added an example script demonstrating the usage of these utilities.
- Implemented comprehensive tests for all new functionalities to ensure reliability and correctness.

* style fixes

* move example to dataset dir

* missing lisence

* fixes mostly path

* clean comments

* move tests to functions instead of class based

* - fix video editting, decode, delete frames and rencode video
- copy unchanged video and parquet files to avoid recreating the entire dataset

* Fortify tooling tests

* Fix type issue resulting from saving numpy arrays with shape 3,1,1

* added lerobot_edit_dataset

* - revert changes in examples
- remove hardcoded split names

* update comment

* fix comment
add lerobot-edit-dataset shortcut

* Apply suggestion from @Copilot

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
Signed-off-by: Michel Aractingi <michel.aractingi@huggingface.co>

* style nit after copilot review

* fix: bug in dataset root when editing the dataset in place (without setting new_repo_id

* Fix bug in aggregate.py when accumelating video timestamps; add tests to fortify aggregate videos

* Added missing output repo id

* migrate delete episode to using pyav instead of decoding, writing frames to disk and encoding again.
Co-authored-by: Caroline Pascal <caroline8.pascal@gmail.com>

* added modified suffix in case repo_id is not set in delete_episode

* adding docs for dataset tools

* bump av version and add back time_base assignment

* linter

* modified push_to_hub logic in lerobot_edit_dataset

* fix(progress bar): fixing the progress bar issue in dataset tools

* chore(concatenate): removing no longer needed concatenate_datasets usage

* fix(file sizes forwarding): forwarding files and chunk sizes in metadata info when splitting and aggregating datasets

* style fix

* refactor(aggregate): Fix video indexing and timestamp bugs in dataset merging

There were three critical bugs in aggregate.py that prevented correct dataset merging:

1. Video file indices: Changed from += to = assignment to correctly reference
   merged video files

2. Video timestamps: Implemented per-source-file offset tracking to maintain
   continuous timestamps when merging split datasets (was causing non-monotonic
   timestamp warnings)

3. File rotation offsets: Store timestamp offsets after rotation decision to
   prevent out-of-bounds frame access (was causing "Invalid frame index" errors
   with small file size limits)

Changes:
- Updated update_meta_data() to apply per-source-file timestamp offsets
- Updated aggregate_videos() to track offsets correctly during file rotation
- Added get_video_duration_in_s import for duration calculation

* Improved docs for split dataset and added a check for the possible case that the split size results in zero episodes

* chore(docs): update merge documentation details

Signed-off-by: Steven Palma <imstevenpmwork@ieee.org>

---------

Co-authored-by: CarolinePascal <caroline8.pascal@gmail.com>
Co-authored-by: Jack Vial <vialjack@gmail.com>
Co-authored-by: Steven Palma <imstevenpmwork@ieee.org>
This commit is contained in:
Michel Aractingi
2025-10-10 12:32:07 +02:00
committed by GitHub
parent 656fc0f059
commit b8f7e401d4
13 changed files with 2593 additions and 30 deletions
+58 -24
View File
@@ -39,7 +39,7 @@ from lerobot.datasets.utils import (
write_stats,
write_tasks,
)
from lerobot.datasets.video_utils import concatenate_video_files
from lerobot.datasets.video_utils import concatenate_video_files, get_video_duration_in_s
def validate_all_metadata(all_metadata: list[LeRobotDatasetMetadata]):
@@ -130,10 +130,34 @@ def update_meta_data(
df["data/chunk_index"] = df["data/chunk_index"] + data_idx["chunk"]
df["data/file_index"] = df["data/file_index"] + data_idx["file"]
for key, video_idx in videos_idx.items():
df[f"videos/{key}/chunk_index"] = df[f"videos/{key}/chunk_index"] + video_idx["chunk"]
df[f"videos/{key}/file_index"] = df[f"videos/{key}/file_index"] + video_idx["file"]
df[f"videos/{key}/from_timestamp"] = df[f"videos/{key}/from_timestamp"] + video_idx["latest_duration"]
df[f"videos/{key}/to_timestamp"] = df[f"videos/{key}/to_timestamp"] + video_idx["latest_duration"]
# Store original video file indices before updating
orig_chunk_col = f"videos/{key}/chunk_index"
orig_file_col = f"videos/{key}/file_index"
df["_orig_chunk"] = df[orig_chunk_col].copy()
df["_orig_file"] = df[orig_file_col].copy()
# Update chunk and file indices to point to destination
df[orig_chunk_col] = video_idx["chunk"]
df[orig_file_col] = video_idx["file"]
# Apply per-source-file timestamp offsets
src_to_offset = video_idx.get("src_to_offset", {})
if src_to_offset:
# Apply offset based on original source file
for idx in df.index:
src_key = (df.at[idx, "_orig_chunk"], df.at[idx, "_orig_file"])
offset = src_to_offset.get(src_key, 0)
df.at[idx, f"videos/{key}/from_timestamp"] += offset
df.at[idx, f"videos/{key}/to_timestamp"] += offset
else:
# Fallback to simple offset (for backward compatibility)
df[f"videos/{key}/from_timestamp"] = (
df[f"videos/{key}/from_timestamp"] + video_idx["latest_duration"]
)
df[f"videos/{key}/to_timestamp"] = df[f"videos/{key}/to_timestamp"] + video_idx["latest_duration"]
# Clean up temporary columns
df = df.drop(columns=["_orig_chunk", "_orig_file"])
df["dataset_from_index"] = df["dataset_from_index"] + dst_meta.info["total_frames"]
df["dataset_to_index"] = df["dataset_to_index"] + dst_meta.info["total_frames"]
@@ -193,6 +217,9 @@ def aggregate_datasets(
robot_type=robot_type,
features=features,
root=aggr_root,
chunks_size=chunk_size,
data_files_size_in_mb=data_files_size_in_mb,
video_files_size_in_mb=video_files_size_in_mb,
)
logging.info("Find all tasks")
@@ -236,6 +263,11 @@ def aggregate_videos(src_meta, dst_meta, videos_idx, video_files_size_in_mb, chu
Returns:
dict: Updated videos_idx with current chunk and file indices.
"""
for key in videos_idx:
videos_idx[key]["episode_duration"] = 0
# Track offset for each source (chunk, file) pair
videos_idx[key]["src_to_offset"] = {}
for key, video_idx in videos_idx.items():
unique_chunk_file_pairs = {
(chunk, file)
@@ -249,6 +281,7 @@ def aggregate_videos(src_meta, dst_meta, videos_idx, video_files_size_in_mb, chu
chunk_idx = video_idx["chunk"]
file_idx = video_idx["file"]
current_offset = video_idx["latest_duration"]
for src_chunk_idx, src_file_idx in unique_chunk_file_pairs:
src_path = src_meta.root / DEFAULT_VIDEO_PATH.format(
@@ -263,21 +296,24 @@ def aggregate_videos(src_meta, dst_meta, videos_idx, video_files_size_in_mb, chu
file_index=file_idx,
)
# If a new file is created, we don't want to increment the latest_duration
update_latest_duration = False
src_duration = get_video_duration_in_s(src_path)
if not dst_path.exists():
# First write to this destination file
# Store offset before incrementing
videos_idx[key]["src_to_offset"][(src_chunk_idx, src_file_idx)] = current_offset
dst_path.parent.mkdir(parents=True, exist_ok=True)
shutil.copy(str(src_path), str(dst_path))
continue # not accumulating further, already copied the file in place
videos_idx[key]["episode_duration"] += src_duration
current_offset += src_duration
continue
# Check file sizes before appending
src_size = get_video_size_in_mb(src_path)
dst_size = get_video_size_in_mb(dst_path)
if dst_size + src_size >= video_files_size_in_mb:
# Rotate to a new chunk/file
# Rotate to a new file, this source becomes start of new destination
# So its offset should be 0
videos_idx[key]["src_to_offset"][(src_chunk_idx, src_file_idx)] = 0
chunk_idx, file_idx = update_chunk_file_indices(chunk_idx, file_idx, chunk_size)
dst_path = dst_meta.root / DEFAULT_VIDEO_PATH.format(
video_key=key,
@@ -286,25 +322,22 @@ def aggregate_videos(src_meta, dst_meta, videos_idx, video_files_size_in_mb, chu
)
dst_path.parent.mkdir(parents=True, exist_ok=True)
shutil.copy(str(src_path), str(dst_path))
# Reset offset for next file
current_offset = src_duration
else:
# Get the timestamps shift for this video
timestamps_shift_s = dst_meta.info["total_frames"] / dst_meta.info["fps"]
# Append to existing video file
# Append to existing video file - use current accumulated offset
videos_idx[key]["src_to_offset"][(src_chunk_idx, src_file_idx)] = current_offset
concatenate_video_files(
[dst_path, src_path],
dst_path,
)
# Update the latest_duration when appending (shifts timestamps!)
update_latest_duration = not update_latest_duration
current_offset += src_duration
videos_idx[key]["episode_duration"] += src_duration
# Update the videos_idx with the final chunk and file indices for this key
videos_idx[key]["chunk"] = chunk_idx
videos_idx[key]["file"] = file_idx
if update_latest_duration:
videos_idx[key]["latest_duration"] += timestamps_shift_s
return videos_idx
@@ -389,9 +422,6 @@ def aggregate_metadata(src_meta, dst_meta, meta_idx, data_idx, videos_idx):
videos_idx,
)
for k in videos_idx:
videos_idx[k]["latest_duration"] += videos_idx[k]["episode_duration"]
meta_idx = append_or_create_parquet_file(
df,
src_path,
@@ -403,6 +433,10 @@ def aggregate_metadata(src_meta, dst_meta, meta_idx, data_idx, videos_idx):
aggr_root=dst_meta.root,
)
# Increment latest_duration by the total duration added from this source dataset
for k in videos_idx:
videos_idx[k]["latest_duration"] += videos_idx[k]["episode_duration"]
return meta_idx